Index

A

alternative_forward() (in module causationentropy.core.discovery), [1], [2]

alternative_optimal_causation_entropy() (in module causationentropy.core.discovery), [1], [2] auc() (in module causationentropy.core.stats), [1], [2], [3]

B

Backward Elimination

backward() (in module causationentropy.core.discovery), [1], [2]

C

Causal Discovery causationentropy module causationentropy.core module causationentropy.core.discovery module causationentropy.core.information module causationentropy.core.information.conditional_mutual_information module causationentropy.core.information.entropy module, [1] causationentropy.core.information.mutual_information module, [1] causationentropy.core.linalg module

causationentropy.core.plotting module causationentropy.core.stats module causationentropy.datasets module causationentropy.datasets.synthetic module, [1] causationentropy.tests module companion_matrix() (in module causationentropy.core.linalg), [1], [2] Compute_TPR_FPR() (in module causationentropy.core.stats), [1], [2], [3] Conditional Mutual Information (CMI) conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2] Conditioning Set correlation_log_determinant() (in module causationentropy.core.linalg), [1], [2], [3]

D

discover_network() (in module causationentropy.core.discovery), [1], [2]

F

False Discovery Rate (FDR)

False Positive Rate (FPR) Forward Selection

G

gaussian_conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2] gaussian_mutual_information() (in module causationentropy.core.information.mutual_information), [1], [2] geometric_knn_conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2]

geometric_knn_entropy() (in module causationentropy.core.information.entropy), [1], [2] geometric_knn_mutual_information() (in module causationentropy.core.information.mutual_information), [1], [2] Granger Causality

H

hyperellipsoid_check() (in module causationentropy.core.information.entropy), [1], [2]

I

Information Criterion

information_lasso_optimal_causation_entropy() (in module causationentropy.core.discovery), [1], [2]

K

k-Nearest Neighbor (k-NN) Estimator kde_conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2] kde_entropy() (in module causationentropy.core.information.entropy), [1], [2]

kde_mutual_information() (in module causationentropy.core.information.mutual_information), [1], [2] Kernel Density Estimation (KDE) knn_conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2] knn_mutual_information() (in module causationentropy.core.information.mutual_information), [1], [2]

L

l2dist() (in module causationentropy.core.information.entropy), [1], [2] Lag LASSO (Least Absolute Shrinkage and Selection Operator)

lasso_optimal_causation_entropy() (in module causationentropy.core.discovery), [1], [2] linear_stochastic_gaussian_process() (in module causationentropy.datasets.synthetic), [1], [2], [3] logisic_dynamics() (in module causationentropy.datasets.synthetic), [1], [2], [3] logistic_map() (in module causationentropy.datasets.synthetic), [1], [2], [3]

M

Maximum Lag module causationentropy causationentropy.core causationentropy.core.discovery causationentropy.core.information causationentropy.core.information.conditional_mutual_information causationentropy.core.information.entropy, [1] causationentropy.core.information.mutual_information, [1] causationentropy.core.linalg causationentropy.core.plotting causationentropy.core.stats causationentropy.datasets causationentropy.datasets.synthetic, [1] causationentropy.tests

Mutual Information

N

Network Inference

O

Optimal Causation Entropy (oCSE)

optimize_circular_order() (in module causationentropy.core.plotting)

P

Permutation Test plot_causal_network() (in module causationentropy.core.plotting), [1] poisson_conditional_mutual_information() (in module causationentropy.core.information.conditional_mutual_information), [1], [2]

poisson_coupled_oscillators() (in module causationentropy.datasets.synthetic), [1], [2], [3] poisson_entropy() (in module causationentropy.core.information.entropy), [1], [2] poisson_joint_entropy() (in module causationentropy.core.information.entropy), [1], [2]

R

roc_curve() (in module causationentropy.core.plotting), [1], [2], [3]

S

shuffle_test() (in module causationentropy.core.discovery), [1], [2] standard_forward() (in module causationentropy.core.discovery), [1], [2]

standard_optimal_causation_entropy() (in module causationentropy.core.discovery), [1], [2] Statistical Significance subnetwork() (in module causationentropy.core.linalg), [1], [2]

T

Time Series

Transfer Entropy True Positive Rate (TPR)

V

Vector Autoregression (VAR)