causationentropy package

CausationEntropy: A Python library for causal network discovery from time series data using Optimal Causation Entropy (oCSE).

Subpackages

• causationentropy.core package
  • Subpackages
    • causationentropy.core.information package
      • causationentropy.core.information.conditional_mutual_information module
      • causationentropy.core.information.entropy module
      • causationentropy.core.information.mutual_information module
      • Module contents
  • causationentropy.core.discovery module
    • discover_network()
    • standard_optimal_causation_entropy()
    • alternative_optimal_causation_entropy()
    • information_lasso_optimal_causation_entropy()
    • lasso_optimal_causation_entropy()
    • alternative_forward()
    • standard_forward()
    • backward()
    • shuffle_test()
    • Main Discovery Function
      • discover_network()
    • Causation Entropy Methods
      • standard_optimal_causation_entropy()
      • alternative_optimal_causation_entropy()
      • information_lasso_optimal_causation_entropy()
      • lasso_optimal_causation_entropy()
    • Selection Algorithms
      • standard_forward()
      • alternative_forward()
      • backward()
    • Statistical Testing
      • shuffle_test()
  • causationentropy.core.linalg module
    • correlation_log_determinant()
    • subnetwork()
    • companion_matrix()
    • correlation_log_determinant()
    • subnetwork()
    • companion_matrix()
  • causationentropy.core.plotting module
    • optimize_circular_order()
    • roc_curve()
    • plot_causal_network()
    • roc_curve()
  • causationentropy.core.stats module
    • auc()
    • Compute_TPR_FPR()
    • auc()
    • Compute_TPR_FPR()
  • Module contents
• causationentropy.datasets package
  • causationentropy.datasets.synthetic module
    • logistic_map()
    • logisic_dynamics()
    • linear_stochastic_gaussian_process()
    • poisson_coupled_oscillators()
    • Dynamical Systems
      • logistic_map()
      • logisic_dynamics()
      • linear_stochastic_gaussian_process()
    • Coupled Oscillators
      • poisson_coupled_oscillators()
  • Module contents
• causationentropy.tests package
  • Submodules
  • causationentropy.tests.test_discovery module
  • causationentropy.tests.test_linalg module
  • causationentropy.tests.test_stats module
  • causationentropy.tests.test_synthetic module
  • Module contents

Module contents